Genetic Variation of Coleosporium plumeriae from Different Provinces in Thailand
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Published:
Feb 19, 2020
Keywords:
Plumeria rust Coleosporium plumeriae Genetic variation ITS rDNA 28S rDNA
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Abstract
Plumeria rust samples were collected from five provinces in Thailand, including Bangkok, Nakhon Pathom, Rayong, Chonburi and Yala. All five isolates produced the uredial stage but only the isolates from Bangkok and Yala also underwent the telial and basidial stages. The morphological characteristics of all three stages present in the life cycle of the isolates were studied under stereo, compound and electron microscopes. Ribosomal DNA (rDNA) sequences at 28S and ITS (internal transcribed spacer) regions were analyzed with those in the GenBank database by Nucleotide BLAST and phylogenetic analyses. Coleosporium plumeriae was identified as the causal agent of plumeria rust by structure morphology and rDNA sequences that revealed genetic variation of the fungus as well. In general, there were significant differences in the morphological characteristics of uredospores, teliospores and basidia among the isolates. However, the variation of spore morphology was not related to the sampling locations. According to the phylogenetic analysis of 28S rDNA sequences, the UPGMA tree grouped all C. plumeriae from Thailand and foreign countries in the same clade as they shared identical sequences. On the other hand, the UPGMA tree inferred from ITS rDNA sequence data detected genetic variation of the isolate from Chonburi and separated it into the distinct tree branch. In this study, structure morphology and ITS rDNA were suitable genetic markers for both interspecific and intraspecific taxonomy of C. plumeriae.
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Chaijuckam, P., Songkumarn, P., Piasai, O., Saralamba, S., Sriariyanun, M., Chowpongpang, S., & Guerrero, J. J. G. (2020). Genetic Variation of Coleosporium plumeriae from Different Provinces in Thailand. Applied Science and Engineering Progress, 13(1), 38–47. Retrieved from https://ph02.tci-thaijo.org/index.php/ijast/article/view/240005
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References
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[22] S.-Y. Park, S.-H. Jang, S.-O. Oh, J. A. Kim, and J.-S. Hur, “An easy, rapid, and cost-effective method for DNA extraction from various lichen taxa and specimens suitable for analysis of fungal and algal strains,” Mycobiology, vol. 42, pp. 311–316, Dec. 2014.
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[24] R. Vilgalys and M. Hester, “Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species,” Journal of Bacteriology, vol. 172, pp. 4238–4246, Aug. 1990.
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[29] S. Kumar, G. Stecher, M. Li, C. Knyaz, and K. Tamura, “MEGA X: Molecular evolutionary genetics analysis across computing platforms,” Molecular Biology and Evolution, vol. 35, pp. 1547–1549, Jun. 2018.
[30] N. Feau, A. Vialle, M. Allaire, W. Maier, and R. C. Hamelin, “DNA barcoding in the rust genus Chrysomyxa and its implications for the phylogeny of the genus,” Mycologia, vol. 103, pp. 1250–1266, Dec. 2011.
[31] M. C. Aime, C. D. Bell, and A. W. Wilson, “Deconstructing the evolutionary complexity between rust fungi (Pucciniales) and their plant hosts,” Studies in Mycology, vol. 89, pp. 143–152, Mar. 2018.
[32] A. R. McTaggart and M. C. Aime, “The species of Coleosporium (Pucciniales) on Solidago in North America,” Fungal Biology, vol. 122, pp. 800–809, Aug. 2018.
[33] Y. Anikster, L. J. Szabo, T. Eilam, J. Manisterski, S. T. Koike, and W. R. Bushnell, “Morphology, life cycle biology, and DNA sequence analysis of rust fungi on garlic and chives from California,” Phytopathology, vol. 94, pp. 569–577, Jun. 2004.
[2] V. Prodkornburi, B. Manasmunkong, S. Suthiarom, W. Wongnikong, S. Sahaya, and C. Buamas. (2013, Aug.). Efficacy of some insecticides for controlling important pests of plumaria. Plant Protection Research and Development Office, Bangkok, Thailand [Online]. Available: http://www.doa.go.th/research/attachment.php? aid=404
[3] S. Ngorien. (2009, Mar.). Plumeria, a beautiful ornamental tree with high economic value that should not be neglected. Plant Protection Research and Development Office, Bangkok, Thailand [Online]. Available: http://doa.go.th/ pibai/pibai/n12/v_2-mar/rai.html
[4] Department of Agricultural Extension. (2015, Dec.). Ornamental plants. Bureau of Agricultural Commodities Promotion and Management, Bangkok, Thailand [Online]. Available: http:// www.agriman.doae.go.th/home/news/year%20 2015/025_ornamental.pdf
[5] S. Nelson. (2009, Jan.). Plumeria Rust. University of Hawaii, Hawaii, USA [Online]. Available: http://scholarspace.manoa.hawaii.edu/handle/10125/12415
[6] M. Kakishima, J.-X. Ji, P. Zhao, Q. Wang, Y. Li, and E. H. C. McKenzie, “Geographic expansion of a rust fungus on Plumeria in Pacific and Asian countries,” New Zealand Journal of Botany, vol. 55, pp. 178–186, Feb. 2017.
[7] J. C. Arthur, Manual of the Rusts in United States and Canada. New York: Hafner, 1962, pp. 36–39.
[8] J. A. Traquair and E. G. Kokko, “Spore morphology in Coleosporium plumeriae,” Canadian Journal of Botany, vol. 58, pp. 2454–2458, Dec. 1980.
[9] D. Y. Ogata and D. E. Gardner, “First report of plumeria rust, caused by Coleosporium plumeriae, in Hawaii,” Plant Disease, vol. 76, pp. 642, Jun. 1992.
[10] W. H. Chung, J. P. Abe, Y. Yamaoka, J. W. Haung, and M. Kakishima, “First report of plumeria rust disease caused by Coleosporium plumeriae in Taiwan,” Plant Pathology, vol. 55, pp. 306, Apr. 2006.
[11] J. F. Hennen, M. B. Figueiredo, A. A. Jr. Carvalho, and P. G. Hennen. (2005). Catalogue of the species of plant rust fungi (Uredinales) of Brazil. Jardim Botânico do Rio de Janeiro, Brazil [Online]. Available: http://www.jbrj.gov.br/publica/uredinales/ Brazil_Catalogue1drevisado.pdf
[12] J. R. Hernández, D. O. Eboh, and A. Y. Rossman, “New reports of rust fungi (Uredinales) from Nigeria,” Caldasia, vol. 27, pp. 213–221, Dec. 2005.
[13] P. Baiswar, S. Chandra, and R. Kumar, “First report of rust caused by Coleosporium plumeriae on Plumeria alba in India,” Plant Pathology, vol. 57, pp. 787, Aug. 2008.
[14] R. G. Shivas, D. R. Beasley, and A. R. McTaggart. (2014). Rust Fungi of Australia. Department of Agriculture and Fisheries, Australia [Online]. Available: http://collections.daff.qld.gov.au/web/ key/rustfungi/Media/Html/coleosporiumplumeriae. html
[15] Q. Y. Yang, B. R. Lin, J. X. Zhang, H. F. Shen, X. M. Pu, Z. W. Wang, and D. Q. Zeng, “First report of rust of Plumeria rubra caused by Coleosporium plumeriae in Guangdong Province, China,” Plant Disease, vol. 98, pp. 1154, Aug. 2014.
[16] G. E. Holcomb and M. C. Aime, “First report of Plumeria spp. rust caused by Coleosporium plumeriae in Louisiana and Malaysia and Catheranthus roseus, a new host of this rust,” Plant Disease, vol. 94, pp. 272, Feb. 2010.
[17] J. Webster and R. W. S. Weber, Introduction to Fungi. New York: Cambridge University Press, 2007, pp. 34–37.
[18] G. N Agrios, Plant Pathology. Massachusetts: Elsevier Academic Press, 2005, pp. 128–134.
[19] J. H. Burnett, Fungal Populations and Species. New York: Oxford University Press, 2003, pp. 29–64.
[20] J. Thomas, “A serious rust disease affecting frangipani (Plumeria rubra) in Kerala State, India,” Journal of Pest Science, vol. 1, pp. 22–26, Aug. 2014.
[21] Q. Wang, P. Q. Thu, and M. Kakishima, “First report of a rust disease of plumeria caused by Coleosporium plumeriae in Southern China and Vietnam,” New Disease Reports, vol. 23, pp. 10, Feb. 2011.
[22] S.-Y. Park, S.-H. Jang, S.-O. Oh, J. A. Kim, and J.-S. Hur, “An easy, rapid, and cost-effective method for DNA extraction from various lichen taxa and specimens suitable for analysis of fungal and algal strains,” Mycobiology, vol. 42, pp. 311–316, Dec. 2014.
[23] M. C. Aime, “Toward resolving family-level relationships in rust fungi (Uredinales),” Mycoscience, vol. 47, pp. 112–122, Jun. 2006.
[24] R. Vilgalys and M. Hester, “Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species,” Journal of Bacteriology, vol. 172, pp. 4238–4246, Aug. 1990.
[25] M. Pfunder, S. Schürch, and B. A. Roy, “Sequence variation and geographic distribution of pseudoflower-forming rust fungi (Uromyces pisi s. lat.) on Euphorbia cyparissias,” Mycological Research, vol. 105, pp. 57–66, Jan. 2001.
[26] L. Beenken, S. Zoller, and R. Berndt, “Rust fungi on Annonaceae II: The genus Dasyspora Berk. & M.A. Curtis,” Mycologia, vol. 104, pp. 659–681, June. 2012.
[27] M. Johnson, I. Zaretskaya, Y. Raytselis, Y. Merezhuk, S. McGinnis, and T. L. Madden, “NCBI BLAST: A better web interface,” Nucleic Acids Research, vol. 36, pp. W5–W9, Apr. 2008.
[28] F. Madeira, Y. M. Park, J. Lee, N. Buso, T. Gur, N. Madhusoodanan, P. Basutkar, A. R. N. Tivey, S. C. Potter, R. D. Finn, and R. Lopez, “The EMBL-EBI search and sequence analysis tools APIs in 2019,” Nucleic Acids Research, vol. 47, pp. W636–W641, Apr. 2019.
[29] S. Kumar, G. Stecher, M. Li, C. Knyaz, and K. Tamura, “MEGA X: Molecular evolutionary genetics analysis across computing platforms,” Molecular Biology and Evolution, vol. 35, pp. 1547–1549, Jun. 2018.
[30] N. Feau, A. Vialle, M. Allaire, W. Maier, and R. C. Hamelin, “DNA barcoding in the rust genus Chrysomyxa and its implications for the phylogeny of the genus,” Mycologia, vol. 103, pp. 1250–1266, Dec. 2011.
[31] M. C. Aime, C. D. Bell, and A. W. Wilson, “Deconstructing the evolutionary complexity between rust fungi (Pucciniales) and their plant hosts,” Studies in Mycology, vol. 89, pp. 143–152, Mar. 2018.
[32] A. R. McTaggart and M. C. Aime, “The species of Coleosporium (Pucciniales) on Solidago in North America,” Fungal Biology, vol. 122, pp. 800–809, Aug. 2018.
[33] Y. Anikster, L. J. Szabo, T. Eilam, J. Manisterski, S. T. Koike, and W. R. Bushnell, “Morphology, life cycle biology, and DNA sequence analysis of rust fungi on garlic and chives from California,” Phytopathology, vol. 94, pp. 569–577, Jun. 2004.