Genetic diversity of genus Filopaludina in the upper northeastern Mekong Basin of Thailand revealed by mitochondrial DNA sequences

Main Article Content

Prapassorn Krairat
Bungorn Thawnon-ngiw
Bangon Kongim

Abstract

This research was applied DNA barcoding tool for the molecular identification of genus \textit{Filupaludina} in Mekong basin northeastern Thailand using mitochondrial-cytochrome c oxidase I (mt-COI). Ninety snails were collected from 9 locations along the river in four provinces (Loei, Nong Khai, Beung Kan, and Nakhon Phanom Provinces,). DNA extraction of individual snail was amplified using COI primers. The PCR products were selected and examined nucleotide sequence before being genetic analysis. The phylogeny analysis suggested that Filupaludina species showed monophyletic with disseminated clades and they were genetically similar to F. martensi. The haplotype diversity observed in Filupaludina species showed 10 patterns of distribution. The genetic distance within subspecies F. martensi martensi and Filupaludina martensi cambodjensis showed mean values equal to 0.1739 and 0.1203, respectively. In addition, the genetic distance within Filupaludina sumatensi polygramma showed 0.3431. Finally, unique haplotypes were commonly found in all locations. These findings revealed that the gene flow of Filupaludina between different locations is limited, leading to the genetic differences that were detected. This study is the first report of the genetic sequence of Filupaludina martensi cambodjensis, and Filupaludina sumatensi polygramma in the upper northeastern of Thailand.

Downloads

Download data is not yet available.

Article Details

How to Cite
Krairat, P., Thawnon-ngiw, B., & Kongim, B. (2020). Genetic diversity of genus Filopaludina in the upper northeastern Mekong Basin of Thailand revealed by mitochondrial DNA sequences. Interdisciplinary Research Review, 15(3), 39 - 43. Retrieved from https://ph02.tci-thaijo.org/index.php/jtir/article/view/239898
Section
Research Articles

References

D. S. Brown, Freshwater snails of Africa and their medical importance, 2nd edition, Taylor & Francis, London, 1994.

Brandt, The non-marine aquatic Mollusca of Thailand, Archiv Molluskenkund, 1974.

W. Noikong, W. Chalobol, Epidemiology and molecular genotyping of echinostome metacercariae in Filopaludina snails in Lamphun Province, Thailand, Asian Pacific Journal of Tropical Medicine (2014) 26 -- 29.

T. T. Group, Snalls of medical importance in Southeast Asia, 17 (1986).

K. Chantima, K. Suk-ueng, M. Kampan, Freshwater snail diversity in Mae Lao agricultural basin (Chiang Rai, Thailand) with a focus on larval trematode infections, Korean Journal of Parasitology 56 (2018) 247 -- 57.

R. Sah, S. Khadka, R. Hamal, S. Poudyal, Human echinostomiasis: A case report, BMC Research Notes 11(1) (2018).

T. K. Graczyk, B. Fried, Echinostomiasis: A common but forgotten food-borne disease, American Journal of Tropical Medicine and Hygiene 58 (1998).

M. E. Sengupta, T. E. Kristensen, H. Madsen, A. Jorgensen, Molecular phylogenetic investigations of the Viviparidae (Gastropoda: Caenogastropoda) in the lakes of the Rift Valley area of Africa, Molecular Phylogenetics and Evolution 52(3) (2009) 797 -- 805.

S. Kumar, G. Stecher, M. Li, C. Knyaz, K. Tamura, MEGA X: Molecular evolutionary genetics analysis across computing platforms, Molecular Biology and Evolution 35(6) (2018) 1547 -- 1549.

M. Kimura, A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences, Journal of Molecular Evolution 16(1) (1980) 11 -- 20.

LOEI Provincial office, LOEI Province, 2017.

C. Tantrawatpan, et al., Genetic structure and geographical variation of Bithynia siamensis goniomphalossensu lato (Gastropoda: Bithyniidae), the snail intermediate host of Opisthorchis viverrinisensu lato (Digenea: Opisthorchiidae) in the Lower Mekong Basin revealed by mitochondria, International Journal for Parasitology 50(2020) 55 -- 62.

T. Hirano, T. Saito, S. Chiba, Phylogeny of freshwater viviparid snails in Japan, Journal of Molluscan Studies 81(2015) 435 -- 441.

D. L. Graf, Palearctic freshwater mussel (Mollusca: Bivalvia: Unionoida) diversity and the Comparatory Method as a species concept.Proceedings of the Academy of Natural Sciences of Philadelphia 156 (2007) 71 -- 88.

L. Puslednik, W. F. Ponder, M. Dowton, A. R. Davis, Examining the phylogeny of the Australasian Lymnaeidae (Heterobranchia: Pulmonata: Gastropoda) using mitochondrial, nuclear and morphological markers. 52(3)(2009) 643 -- 659.

Minton & Lydeard. Freshwater Mollusks of the World: A Distribution Atlas. Charles Lydeard KSC, editor, Molecular Phylogenetics and Evolution (2010).

T. L. Fuller, et al., Intraspecific morphological and genetic variation of common species predicts ranges of threatened ones, Proceedings of the Royal Society B: Biological Sciences 7 (2013) 7 -- 19.

Y. Hu, et al., Genetic variability of the invasive snail Pomacea canaliculata in South China based on mitochondrial 16S rDNA sequences, Biochemical Systematics and Ecology 57 (2014) 203 -- 209

S. Lv et al., Phylogenetic evidence for multiple and secondary introductions of invasive snails: Pomacea species in the People's Republic of China, Diversity Distribution 19 (2019) 147 -- 156.

DB Error: Unknown column 'Array' in 'on clause'