Assessing the soil bacterial community and minerals around roots of tiger grass (Thysanolaena latifolia) from Mae Sot District, Tak Province, Thailand
Keywords:
V3-4, NGS, Microbes, Highland, Tiger GrassAbstract
This study aimed to investigate the soil bacterial community and minerals near the roots of tiger grass (Thysanolaena latifolia) from Mae Sot District, Tak Province. Soil samples were collected from three sites. Site 1 was an area that had been cultivated for maize. Site 2 had never been used for agriculture. Site 3 had been cultivated for cabbage. For the microbiota analysis, a HiSeq 2500 system was used to perform Illumina next-generation sequencing to obtain the bacterial sequences targeted to V3-V4 of the 16S rRNA gene. Moreover, pH, soil moisture, temperature, electrical conductivity, the C/N ratio, and the contents of potassium (K), phosphorus (P), sulfur (S), aluminium (Al), manganese (Mn), nickel (Ni), copper (Cu), iron (Fe) and zinc (Zn) were evaluated. The operational taxonomic units (OTUs) of the microbes at sites 1, 2 and 3 were 4,226, 3,937 and 2,958, respectively. The number of OTUs shared by all the samples and sites was 1,684. In phyla, "Proteobacteria" was the most abundant at sites 2 and 3. In contrast, "Acidobacteriota", "Planctomycetota" and "Verrucomicrobiota" were most abundant at site 1, but "Candidatus Thermoplasmatota" was predominant at site 2. In terms of genera, Methylobacillus and Pseudarthrobacter were the most abundant at site 2, but Sphingomonas was predominant at site 3. The values for pH, soil moisture, the C/N ratio, and the contents of K, Ni, Cu, Fe and Zn were significantly different among the three sites. These results may provide important data to support an understanding of soil microbes and minerals in waste lands. The results revealed that the core bacterial elements may depend on the characteristics of the soil and environment. In addition, these data may help support the restoration of land in the future.
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Schoch, C. L., Ciufo, S., Domrachev, M., Hotton, C. L., Kannan, S., Khovanskaya, R., Leipe, D., Mcveigh, R., O'Neill, K., Robbertse, B., Sharma, S., Soussov, V., Sullivan, J. P., Sun, L., Turner, S., and Karsch-Mizrachi, I. (2020). NCBI Taxonomy: A comprehensive update on curation, resources and tools. Database, 2020, Article baaa062. https://doi.org/10.1093/database/baaa062
Christenhusz, M. J. M., and Byng, J. W. (2016). The number of known plants species in the world and its annual increase. Phytotaxa, 261(3), 201-217. https://doi.org/10.11646/phytotaxa.261.3.1
Noltie, H. J. (2000). Flora of Bhutan. Royal Botanic Gardens: Edinburgh.
Niveditha, T., and Balarama, P. (2016). Thysanolaena latifolia (Roxb. ex Hornem.) Honda as natural resource and product for the tribals of Srikakulam District, Andhra Pradesh, India. Indian Journal of Natural Products and Resources, 7(2), 181-184.
Bisht, N. S., and Ahlawat, S. P. (1998). Broom grass. State Forest Research Institute, 9, 1-10.
Choudhary, V. K., Pant, P., Babu, C. R., and Mazumdar-Leighton, S. (2018). Bacterial typing of diverse rhizospheric communities of the Ravine broom grass Thysanolaena latifolia (Roxb. ex Hornem.) Honda., fam. Poaceae., associated with iron ore mines. In V. Ramana (Chairs), International Symposium on Host–Pathogen Interaction [Symposium]. 59th International Annual Conference of The Association of Microbiologists of India, Hyderabad, India.
Wippel, K., Tao, K., Niu, Y., Zgadzaj, R., Kiel, N., Guan, R., Dahms, E., Zhang, P., Jensen, D. B., Logemann, E., Radutoiu, S., Schulze-Lefert, P., and Garrido-Oter, R. (2021). Host preference and invasiveness of commensal bacteria in the Lotus and Arabidopsis root microbiota. Nature Microbiology, 6(9), 1150-1162. https://doi.org/10.1038/s41564-021-00941-9
Finkel, O. M., Salas-González, I., Castrillo, G., Conway, J. M., Law, T. F., Teixeira, P. J. P. L., Wilson, E. D., Fitzpatrick, C. R., Jones, C. D., and Dangl, J. L. (2020). A single bacterial genus maintains root growth in a complex microbiome. Nature, 587(7832), 103-108. https://doi.org/10.1038/s41586-020-2778-7
Calvaruso, C., Turpault, M. P., and Frey-Klett, P. (2006). Root-associated bacteria contribute to mineral weathering and to mineral nutrition in trees: A budgeting analysis. Applied and Environmental Microbiology, 72(2), 1258-1266. https://doi.org/10.1128/AEM.72.2.1258-1266.2006
Jacoby, R., Peukert, M., Succurro, A., Koprivova, A., and Kopriva, S. (2017). The role of soil microorganisms in plant mineral nutrition-current knowledge and future directions. Frontiers in Plant Science, 8, Article 1617. https://doi.org/10.3389/fpls.2017.01617
Edwards, J., Johnson, C., Santos-Medellín, C., Lurie, E., Podishetty, N. K., Bhatnagar, S., Eisen, J. A., and Sundaresan, V. (2015). Structure, variation, and assembly of the root-associated microbiomes of rice. Proceedings of the National Academy of Sciences of the United States of America, 112(8), E911-E920. https://doi.org/10.1073/pnas.1414592112
Bulgarelli, D., Garrido-Oter, R., Münch, P. C., Weiman, A., Dröge, J., Pan, Y., McHardy, A. C., and Schulze-Lefert, P. (2015). Structure and function of the bacterial root microbiota in wild and domesticated barley. Cell Host and Microbe, 17(3), 392-403. https://doi.org/10.1016/j.chom.2015.01.011
Norsaengsri, M., Sungkaew, S., Janloy, A., and Teerawatananon, A. (2022). Grasses in Thailand. Pathum Thani: The National Science Museum Thailand Press.
Bhilabutra, W., McKenzie, E., Hyde, K., and Lumyong, S. (2010). Mycosphere Fungi on the grasses, Thysanolaena latifolia and Saccharum spontaneum, in northern Thailand. Mycosphere, 5, 301-314.
Apaso, S., Dechomang, S., Junto, N., and Bodeerat, C. (2023). Development of border special economic zones. Journal of Administration and Social Science Review, 6(2), 229-235.
Bray, R. H., and Kurtz, L. T. (1945). Determination of total, organic, and available forms of phosphorus in soil. Soil Science, 59(1), 39-46. https://doi.org/10.1097/00010694-194501000-00006
Spain, A. M., Krumholz, L. R., and Elshahed, M. S. (2009). Abundance, composition, diversity and novelty of soil Proteobacteria. The ISME journal, 3(8), 992-1000. https://doi.org/10.1038/ismej.2009.43
Zhou, Y., Qin, Y., Liu, X., Feng, Z., Zhu, H., and Yao, Q. (2019). Soil bacterial function associated with stylo (Legume) and bahiagrass (Grass) Is affected more strongly by soil chemical property than by bacterial community composition. Frontiers in Microbiology, 10, Article 798. https://doi.org/10.3389/fmicb.2019.00798
Macey, M. C., Pratscher, J., Crombie, A., and Murrell, J. C. (2018). Draft genome sequences of obligate Methylotrophs Methylovorus sp. Strain MM2 and Methylobacillus sp. Strain MM3, Isolated from grassland soil. Microbiology Resource Announcements, 7(8), Article e00824-18. https://doi.org/10.1128/MRA.00824-18
Sun, Y., Wang, C., Mi, W., Qu, Z., Mu, W., Wang, J., Zhang, J., and Wang, Q. (2022). Effects of irrigation using activated brackish water on the bacterial community structure of rhizosphere soil. Journal of Soil Science and Plant Nutrition, 22, 4008-4023. https://doi.org/10.1007/s42729-022-01003-7
Kroeksakul, P., Ngamniyom, A., Silprasit, K., Phanom, S., Thayat, S., Phowan, N., and Singhaboot, P. (2023). Evaluation of pesticide and heavy metal contamination on soil properties and microbiota in Thailand’s mountainous region. Journal of Ecological Engineering, 24(7), 331-344. https://doi.org/10.12911/22998993/165957
Jia, Y. -H., Jin, Z. -J., Yuan, W., Cheng, Y. -Y., Qiu, J. -M., Liang, J. -T., Pan, F. -J., and Liu, D. -S. (2019). Comparison of soil bacterial community structure between paddy fields and dry land in the huixian karst wetland, China. Huanjing Kexue, 40(7), 3313-3323.
https://doi.org/10.13227/j.hjkx.201811048
Ofek, M., Hadar, Y., and Minz, D. (2012). Ecology of root colonizing Massilia (Oxalobacteraceae). PLoS One, 7(7), Article e40117. https://doi.org/10.1371/journal.pone.0040117
Zhang, S. -Y., Xiao, W., Xia, Y. -S., Wang, Y. -X., Cui, X. -L., and Zhang, N. -M. (2015). Arenimonas taoyuanensis sp. nov., a novel bacterium isolated from rice-field soil in China. Antonie Van Leeuwenhoek, 107(5), 1181-1187. https://doi.org/10.1007/s10482-015-0409-3
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